Yes I have noticed the red writing doesnāt show up for all boxes or plants. it is best practice to not touch anything on an NPC base to be 100% sure you donāt affect your reputation with them.
if u want that RP back just have all ur faction mates hit F1 and select the protoz raid for each one and head to protoz. i have an HV i made just for that mission. just watch the shieldsā¦
the mission itself has a few bugs. sometimes u have to deactivate and reactivate it. u must kill at least 1 core. manually firing a plasma turret is very handy to snipe with.
the kriel, pirates, and traders do not have that mission yet. i believe the game developers at eleon studios are the ones that have the ability to add them to that list. there is a way to get full honored with all 6 if done correctly. 1st beat the hell out of pirate structures until kriel and traders are maxed. then look for a Polaris mining station asteroid base (used to be one in binomi) and use a CV drill turret till pirates and zirax are maxed. then run protoz raid for Polaris and tallon. it goes faster the more people u have doing this.